How to Install and Uninstall cnvkit Package on Ubuntu 21.04 (Hirsute Hippo)

Last updated: November 22,2024

1. Install "cnvkit" package

Please follow the steps below to install cnvkit on Ubuntu 21.04 (Hirsute Hippo)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                cnvkit
            
                    
    
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2. Uninstall "cnvkit" package

Learn how to uninstall cnvkit on Ubuntu 21.04 (Hirsute Hippo):


    
        
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                sudo apt remove
            
                        
                cnvkit
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the cnvkit package on Ubuntu 21.04 (Hirsute Hippo)

Package: cnvkit
Architecture: amd64
Version: 0.9.8-1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 69059
Depends: python3-biopython, python3-matplotlib, python3-numpy, python3-pandas, python3-pomegranate, python3-pyfaidx, python3-pysam, python3-reportlab, python3-scipy, python3-sklearn, python3:any, r-bioc-dnacopy
Filename: pool/universe/c/cnvkit/cnvkit_0.9.8-1_amd64.deb
Size: 15426616
MD5sum: 7b7c0f367641ff6fd120949071538b7d
SHA1: 8a9614456ea8892b7ae8375056510b1537bfb7d8
SHA256: f3cd339385e403d53cd45448ae7b7942a712eb13d03d0410fbc5d5c8fc969179
SHA512: b5a596a098d13a8cef63bc451e701dc5abbacf43c0da2cce6da1e08b1a6a6b2947612b2fe7828917b94cab19717ece5a2b73c1b736445e1d51649f8ecd13ec86
Homepage: http://cnvkit.readthedocs.org
Description-en: Copy number variant detection from targeted DNA sequencing
A command-line toolkit and Python library for detecting copy number variants
and alterations genome-wide from targeted DNA sequencing. It is designed for
use with hybrid capture, including both whole-exome and custom target panels,
and short-read sequencing platforms such as Illumina and Ion Torrent.
Description-md5: 0b8ab5ba6be9de3379277ab7a92a7b5d