How to Install and Uninstall r-bioc-dnacopy Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: December 24,2024

1. Install "r-bioc-dnacopy" package

Please follow the steps below to install r-bioc-dnacopy on Ubuntu 20.10 (Groovy Gorilla)


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                r-bioc-dnacopy
            
                    
    
    Copied

2. Uninstall "r-bioc-dnacopy" package

Please follow the step by step instructions below to uninstall r-bioc-dnacopy on Ubuntu 20.10 (Groovy Gorilla):


    
        
            $
        

        
            
                sudo apt remove
            
                        
                r-bioc-dnacopy
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the r-bioc-dnacopy package on Ubuntu 20.10 (Groovy Gorilla)

Package: r-bioc-dnacopy
Architecture: amd64
Version: 1.62.0-1build1
Priority: optional
Section: universe/gnu-r
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian R Packages Maintainers
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 520
Depends: r-base-core (>= 4.0.0.20200528-1), r-api-4.0, r-api-bioc-3.11, libc6 (>= 2.29), libgfortran5 (>= 8)
Filename: pool/universe/r/r-bioc-dnacopy/r-bioc-dnacopy_1.62.0-1build1_amd64.deb
Size: 419344
MD5sum: 673611bf647fa760fa375beff186d243
SHA1: f2bd050706121d591aed96e482efd4bb4671052a
SHA256: 5323250a8702c4ced04db10dbc60738f7b530874b2a8fa2ebc425a325b5f5a5c
SHA512: e0164cb584a62fde44f8b84ca9100dd6099a02c3d182640b620d1f9eb0e865e20a54d93c923c648e7ffbda09bde91da8df19bc8093d2f99f7301991653d8d2bd
Homepage: https://www.bioconductor.org/packages/DNAcopy/
Description-en: R package: DNA copy number data analysis
Implements the circular binary segmentation (CBS) algorithm to segment DNA
copy number data and identify genomic regions with abnormal copy number.
.
This package is for analyzing array DNA copy number data, which is usually
(but not always) called array Comparative Genomic Hybridization (array CGH)
data It implements a methodology for finding change-points in these data which
are points after which the (log) test over reference ratios have changed
location. This model is that the change-points correspond to positions where
the underlying DNA copy number has changed. Therefore, change-points can be
used to identify regions of gained and lost copy number. Also provided is a
function for making relevant plots of these data.
Description-md5: 04b2d7285fe6dc95b253d19cdc336532