How to Install and Uninstall r-bioc-tcgabiolinks Package on Ubuntu 21.10 (Impish Indri)

Last updated: December 24,2024

1. Install "r-bioc-tcgabiolinks" package

This is a short guide on how to install r-bioc-tcgabiolinks on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                r-bioc-tcgabiolinks
            
                    
    
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2. Uninstall "r-bioc-tcgabiolinks" package

Here is a brief guide to show you how to uninstall r-bioc-tcgabiolinks on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                r-bioc-tcgabiolinks
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the r-bioc-tcgabiolinks package on Ubuntu 21.10 (Impish Indri)

Package: r-bioc-tcgabiolinks
Architecture: all
Version: 2.18.0+dfsg-1
Priority: optional
Section: universe/gnu-r
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian R Packages Maintainers
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 5890
Depends: r-base-core (>= 4.0.3-1), r-api-4.0, r-api-bioc-3.12, r-cran-downloader (>= 0.4), r-bioc-biomart, r-cran-dplyr, r-cran-tibble, r-bioc-genomicranges, r-cran-xml (>= 3.98.0), r-cran-data.table, r-cran-jsonlite (>= 1.0.0), r-cran-plyr, r-cran-knitr, r-cran-ggplot2, r-cran-stringr (>= 1.0.0), r-bioc-iranges, r-cran-rvest (>= 0.3.0), r-bioc-s4vectors, r-cran-r.utils, r-bioc-summarizedexperiment (>= 1.4.0), r-bioc-tcgabiolinksgui.data, r-cran-readr, r-cran-tidyr, r-cran-purrr, r-cran-xml2, r-cran-httr (>= 1.2.1)
Recommends: r-cran-testthat, r-bioc-edaseq, r-cran-survminer, r-bioc-edger
Suggests: r-cran-jpeg, r-cran-png, r-bioc-biocstyle, r-cran-rmarkdown, r-cran-devtools, r-cran-parmigene, r-bioc-biobase, r-bioc-affy, r-bioc-complexheatmap, r-cran-circlize, r-bioc-consensusclusterplus, r-cran-igraph, r-bioc-limma, r-bioc-sva, r-bioc-genefilter, r-cran-gridextra, r-cran-survival, r-cran-doparallel, r-cran-ggrepel (>= 0.6.3), r-cran-scales
Filename: pool/universe/r/r-bioc-tcgabiolinks/r-bioc-tcgabiolinks_2.18.0+dfsg-1_all.deb
Size: 5626512
MD5sum: 4b3d8f69352856bd723cfcf3093f9093
SHA1: c42f2efea0f4bd79ff25c7188158d5c672960043
SHA256: a8cfc6be070bcfaab8140c723cae3a6c30bcf0f44042c7b42dc3b54a3f342d5f
SHA512: 2df295e8f7db3e0021083b3975363299e09a768f8d738ec662bd4be51f8407bc3addb73006281b51fd86cb72367865007e53df7829feeb36dd6da01eb03d4eb3
Homepage: https://bioconductor.org/packages/TCGAbiolinks/
Description-en: GNU R/Bioconductor package for integrative analysis with GDC data
The aim of TCGAbiolinks is:
1) facilitate the GDC open-access data retrieval,
2) prepare the data using the appropriate pre-processing strategies,
3) provide the means to carry out different standard analyses and
4) to easily reproduce earlier research results.
In more detail, the package provides multiple methods for analysis (e.g.,
differential expression analysis, identifying differentially methylated
regions) and methods for visualization (e.g., survival plots, volcano plots,
starburst plots) in order to easily develop complete analysis pipelines.
Description-md5: a12bea649d7df136b7f6898c8a08d8c7