How to Install and Uninstall pigx-rnaseq Package on Debian 12 (Bookworm)

Last updated: May 13,2024

You can also install and uninstall the pigx-rnaseq on the following distributions in the same way, as they are all based on the Debian system

MX Linux 23
SparkyLinux

1. Install "pigx-rnaseq" package

This is a short guide on how to install pigx-rnaseq on Debian 12 (Bookworm)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                pigx-rnaseq
            
                    
    
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2. Uninstall "pigx-rnaseq" package

This tutorial shows how to uninstall pigx-rnaseq on Debian 12 (Bookworm):


    
        
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                sudo apt remove
            
                        
                pigx-rnaseq
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the pigx-rnaseq package on Debian 12 (Bookworm)

Package: pigx-rnaseq
Version: 0.1.0-1.1
Installed-Size: 176
Maintainer: Debian Med Packaging Team
Architecture: all
Depends: fastp, fastqc, hisat2 | rna-star, libjs-jquery-datatables, libjs-jquery-tablesorter, megadepth, multiqc, python3:any, python3-deeptools, python3-htseq, r-bioc-deseq2, r-bioc-rtracklayer, r-bioc-summarizedexperiment, r-bioc-tximport, r-cran-corrplot, r-cran-crosstalk, r-cran-data.table, r-cran-dt (>= 0.15+dfsg-2), r-cran-ggplot2, r-cran-ggpubr, r-cran-ggrepel, r-cran-gprofiler2, r-cran-pheatmap, r-cran-plotly, r-cran-reshape2, r-cran-rjson, r-cran-rlang, r-cran-rmarkdown, r-cran-scales, salmon, samtools, snakemake, trim-galore
Recommends: hisat2, rna-star
Description: pipeline for checkpointed and distributed RNA-seq analyses
Description-md5: e48b7ff1eb2b189a5bedb2ce0c32035c
Homepage: https://github.com/BIMSBbioinfo/pigx_rnaseq
Section: science
Priority: optional
Filename: pool/main/p/pigx-rnaseq/pigx-rnaseq_0.1.0-1.1_all.deb
Size: 61244
MD5sum: c498fc408d04299178397f05965119df
SHA256: 32b5f61115e9fbe559bf2f2dc316127579029f6a4309457906c100956c9ee553