How to Install and Uninstall pigx-rnaseq Package on Linux Mint 21.3 (Virginia)

Last updated: May 13,2024

1. Install "pigx-rnaseq" package

This guide covers the steps necessary to install pigx-rnaseq on Linux Mint 21.3 (Virginia)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                pigx-rnaseq
            
                    
    
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2. Uninstall "pigx-rnaseq" package

Please follow the instructions below to uninstall pigx-rnaseq on Linux Mint 21.3 (Virginia):


    
        
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                sudo apt remove
            
                        
                pigx-rnaseq
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the pigx-rnaseq package on Linux Mint 21.3 (Virginia)

Package: pigx-rnaseq
Architecture: all
Version: 0.0.19-2
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 160
Depends: fastp, fastqc, hisat2 | rna-star, libjs-jquery-datatables, libjs-jquery-tablesorter, multiqc, pandoc-citeproc, python3:any, python3-deeptools, python3-htseq, r-bioc-deseq2, r-bioc-rtracklayer, r-bioc-summarizedexperiment, r-bioc-tximport, r-cran-corrplot, r-cran-crosstalk, r-cran-data.table, r-cran-dt (>= 0.15+dfsg-2), r-cran-ggplot2, r-cran-ggpubr, r-cran-ggrepel, r-cran-gprofiler2, r-cran-pheatmap, r-cran-plotly, r-cran-reshape2, r-cran-rjson, r-cran-rlang, r-cran-rmarkdown, r-cran-scales, salmon, samtools, snakemake, trim-galore
Recommends: hisat2, rna-star
Filename: pool/universe/p/pigx-rnaseq/pigx-rnaseq_0.0.19-2_all.deb
Size: 49658
MD5sum: 77ef802656de4648f2091420442b574e
SHA1: 1255b3d23180b8cfb8275e0ceefdaab12d0b1517
SHA256: de7fd45ae6be57070cfa6575813a7c6ffe76a064b19a9f0824746cd22fef5898
SHA512: 8905aa53d51aeb7b90584e3130cd92d9bf1cb3381f70f47ceaa9c847a4622e12f2cf72a130b0ae8490a0d4feab30a95a918afc54790dfe299632b0ce5bd6fb59
Homepage: https://github.com/BIMSBbioinfo/pigx_rnaseq
Description: pipeline for checkpointed and distributed RNA-seq analyses
Description-md5: e48b7ff1eb2b189a5bedb2ce0c32035c