How to Install and Uninstall pigx-rnaseq Package on Ubuntu 21.10 (Impish Indri)

Last updated: December 28,2024

1. Install "pigx-rnaseq" package

Here is a brief guide to show you how to install pigx-rnaseq on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                pigx-rnaseq
            
                    
    
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2. Uninstall "pigx-rnaseq" package

Please follow the steps below to uninstall pigx-rnaseq on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                pigx-rnaseq
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the pigx-rnaseq package on Ubuntu 21.10 (Impish Indri)

Package: pigx-rnaseq
Architecture: all
Version: 0.0.10+ds-2
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 151
Depends: python3:any, pandoc-citeproc, snakemake, fastqc, samtools, python3-deeptools, salmon, rna-star, trim-galore, multiqc, python3-htseq, r-bioc-deseq2, r-bioc-tximport, r-cran-data.table, r-cran-rlang, r-cran-rmarkdown, r-cran-ggplot2, r-cran-ggrepel, r-cran-dt (>= 0.15+dfsg-2), r-cran-pheatmap, r-cran-corrplot, r-cran-reshape2, r-cran-plotly, r-cran-scales, r-cran-crosstalk, r-cran-gprofiler, r-bioc-summarizedexperiment, r-bioc-rtracklayer, r-cran-rjson, libjs-jquery-datatables, libjs-jquery-tablesorter
Filename: pool/universe/p/pigx-rnaseq/pigx-rnaseq_0.0.10+ds-2_all.deb
Size: 45400
MD5sum: 7fd65f0213bd8b7b8d87d2323aa47071
SHA1: aee226019e65ebb06143f440b2c539a982dfb3b1
SHA256: a82943834a63c6ec322465524d273a0bfa1999bbeeeeccbb28c93335ec9eea1b
SHA512: ae617460f3c0f2bea2fdfc133d881a8e5fa7a482ffa8447a1b4fd301f997a45a4b0027a5284c056a2bbce02e24b2ff7c514bab9b037a9b0c866e41c6343b5630
Homepage: https://github.com/BIMSBbioinfo/pigx_rnaseq
Description-en: pipeline for checkpointed and distributed RNA-seq analyses
This package provides a automated workflow for the automated analysis of
RNA-seq experiments. A series of well-accecpted tools are connected in
Python scripts and controlled via snakemake. This supports the parallel
execution of these workflows and provides checkpointing, such that
interrupted workflows can take up their work again.
Description-md5: e48b7ff1eb2b189a5bedb2ce0c32035c