How to Install and Uninstall pigx-rnaseq Package on Kali Linux

Last updated: May 13,2024

Deprecated! Installation of this package may no longer be supported.

1. Install "pigx-rnaseq" package

This guide let you learn how to install pigx-rnaseq on Kali Linux


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                pigx-rnaseq
            
                    
    
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2. Uninstall "pigx-rnaseq" package

In this section, we are going to explain the necessary steps to uninstall pigx-rnaseq on Kali Linux:


    
        
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                sudo apt remove
            
                        
                pigx-rnaseq
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the pigx-rnaseq package on Kali Linux

Package: pigx-rnaseq
Version: 0.1.0-1.1
Installed-Size: 176
Maintainer: Debian Med Packaging Team
Architecture: all
Depends: fastp, fastqc, hisat2 | rna-star, libjs-jquery-datatables, libjs-jquery-tablesorter, megadepth, multiqc, python3:any, python3-deeptools, python3-htseq, r-bioc-deseq2, r-bioc-rtracklayer, r-bioc-summarizedexperiment, r-bioc-tximport, r-cran-corrplot, r-cran-crosstalk, r-cran-data.table, r-cran-dt (>= 0.15+dfsg-2), r-cran-ggplot2, r-cran-ggpubr, r-cran-ggrepel, r-cran-gprofiler2, r-cran-pheatmap, r-cran-plotly, r-cran-reshape2, r-cran-rjson, r-cran-rlang, r-cran-rmarkdown, r-cran-scales, salmon, samtools, snakemake, trim-galore
Recommends: hisat2, rna-star
Size: 61244
SHA256: 32b5f61115e9fbe559bf2f2dc316127579029f6a4309457906c100956c9ee553
SHA1: f37f945f2af0651c939d52aabb88c938ef497e7a
MD5sum: c498fc408d04299178397f05965119df
Description: pipeline for checkpointed and distributed RNA-seq analyses
This package provides a automated workflow for the automated analysis of
RNA-seq experiments. A series of well-accecpted tools are connected in
Python scripts and controlled via snakemake. This supports the parallel
execution of these workflows and provides checkpointing, such that
interrupted workflows can take up their work again.
Description-md5:
Homepage: https://github.com/BIMSBbioinfo/pigx_rnaseq
Section: science
Priority: optional
Filename: pool/main/p/pigx-rnaseq/pigx-rnaseq_0.1.0-1.1_all.deb