How to Install and Uninstall pigx-rnaseq Package on Debian 11 (Bullseye)

Last updated: May 18,2024

1. Install "pigx-rnaseq" package

Please follow the instructions below to install pigx-rnaseq on Debian 11 (Bullseye)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                pigx-rnaseq
            
                    
    
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2. Uninstall "pigx-rnaseq" package

Please follow the steps below to uninstall pigx-rnaseq on Debian 11 (Bullseye):


    
        
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                sudo apt remove
            
                        
                pigx-rnaseq
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the pigx-rnaseq package on Debian 11 (Bullseye)

Package: pigx-rnaseq
Version: 0.0.10+ds-2
Installed-Size: 151
Maintainer: Debian Med Packaging Team
Architecture: all
Depends: python3:any, pandoc-citeproc, snakemake, fastqc, samtools, python3-deeptools, salmon, rna-star, trim-galore, multiqc, python3-htseq, r-bioc-deseq2, r-bioc-tximport, r-cran-data.table, r-cran-rlang, r-cran-rmarkdown, r-cran-ggplot2, r-cran-ggrepel, r-cran-dt (>= 0.15+dfsg-2), r-cran-pheatmap, r-cran-corrplot, r-cran-reshape2, r-cran-plotly, r-cran-scales, r-cran-crosstalk, r-cran-gprofiler, r-bioc-summarizedexperiment, r-bioc-rtracklayer, r-cran-rjson, libjs-jquery-datatables, libjs-jquery-tablesorter
Description: pipeline for checkpointed and distributed RNA-seq analyses
Description-md5: e48b7ff1eb2b189a5bedb2ce0c32035c
Homepage: https://github.com/BIMSBbioinfo/pigx_rnaseq
Section: science
Priority: optional
Filename: pool/main/p/pigx-rnaseq/pigx-rnaseq_0.0.10+ds-2_all.deb
Size: 54364
MD5sum: 9f43b757b62d0110fd87612559a98a54
SHA256: 42e1e07a5c08e81287bcd2c8b5b4dd34c1900baa59d97d4ab5cccf23575e33a2