How to Install and Uninstall r-bioc-tfbstools Package on Ubuntu 21.10 (Impish Indri)

Last updated: May 14,2024

1. Install "r-bioc-tfbstools" package

Please follow the step by step instructions below to install r-bioc-tfbstools on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                r-bioc-tfbstools
            
                    
    
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2. Uninstall "r-bioc-tfbstools" package

Please follow the guidelines below to uninstall r-bioc-tfbstools on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                r-bioc-tfbstools
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the r-bioc-tfbstools package on Ubuntu 21.10 (Impish Indri)

Package: r-bioc-tfbstools
Architecture: amd64
Version: 1.28.0+dfsg-1
Priority: optional
Section: universe/gnu-r
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian R Packages Maintainers
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 1931
Depends: r-base-core (>= 4.0.3-1), r-api-4.0, r-api-bioc-3.12, r-bioc-biobase (>= 2.28), r-bioc-biostrings (>= 2.36.4), r-bioc-biocgenerics (>= 0.14.0), r-bioc-biocparallel (>= 1.2.21), r-bioc-bsgenome (>= 1.36.3), r-cran-catools (>= 1.17.1), r-bioc-cner (>= 1.4.0), r-bioc-dirichletmultinomial (>= 1.10.0), r-bioc-genomeinfodb (>= 1.6.1), r-bioc-genomicranges (>= 1.20.6), r-cran-gtools (>= 3.5.0), r-bioc-iranges (>= 2.2.7), r-cran-dbi (>= 0.6), r-cran-rsqlite (>= 1.0.0), r-bioc-rtracklayer (>= 1.28.10), r-bioc-seqlogo (>= 1.34.0), r-bioc-s4vectors (>= 0.9.25), r-cran-tfmpvalue (>= 0.0.5), r-cran-xml (>= 3.98-1.3), r-bioc-xvector (>= 0.8.0), libc6 (>= 2.4)
Recommends: r-cran-testthat
Suggests: r-bioc-biocstyle (>= 1.7.7), r-cran-knitr (>= 1.11)
Filename: pool/universe/r/r-bioc-tfbstools/r-bioc-tfbstools_1.28.0+dfsg-1_amd64.deb
Size: 1086100
MD5sum: 37f9136dc41840d7fcd352e01cbde7aa
SHA1: 24c37b1ef03919b2616144393b2228e4a3b3a728
SHA256: 9403a830f4bd4e02c2dc24b29aeeb423a7d3a51e007d893789d73049dfffecf6
SHA512: 2c3779b8a94271072cf7f68ee9e047dbe3270d698c812eabbebf03b064ba7e878a763384ca0af7b001b8d4fdfab2c6ee6dd1e73c3ea7024cc43fb1e96d7054b2
Homepage: https://bioconductor.org/packages/TFBSTools/
Description-en: GNU R Transcription Factor Binding Site (TFBS) Analysis
TFBSTools is a package for the analysis and manipulation of
transcription factor binding sites. It includes matrices conversion
between Position Frequency Matirx (PFM), Position Weight Matirx (PWM)
and Information Content Matrix (ICM). It can also scan putative TFBS
from sequence/alignment, query JASPAR database and provides a wrapper of
de novo motif discovery software.
Description-md5: 50e2d45d8eaf57895dd9d09ce4967d52